PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG006058.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ERF
Protein Properties Length: 250aa    MW: 26726.9 Da    PI: 6.6907
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG006058.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.64.7e-1684132255
          AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                   +kGVr +  +g+Wv+eIr+p++   ++r++lg++ t+e+Aa a++ a+++l+g
  CCG006058.1  84 SFKGVRLR--SGKWVSEIREPRK---TTRVWLGTYPTPEMAATAYDVAALALKG 132
                  69***986..5*********843...5************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.8E-1083132IPR001471AP2/ERF domain
CDDcd000182.59E-2783142No hitNo description
PROSITE profilePS5103219.38884140IPR001471AP2/ERF domain
SMARTSM003801.6E-2784146IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-2584142IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-1785142IPR016177DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MANPKPQADQ LPPLHSPILI PSPNRSSGQP FSSRHDEHSP RLIRLPIGIS SQPMSGRHGD  60
QSPRRPIRSL GGSSAQPASG RHPSFKGVRL RSGKWVSEIR EPRKTTRVWL GTYPTPEMAA  120
TAYDVAALAL KGTNTPLNFP ESILSYPIPA SASPSDIRAA AASAASARSP KLESGPNPEM  180
GQPETESSSS IITTDVQSGQ EIFDEEEFLN MPNLLVDMAG GMLVSPPRIN TLSSDDSPGS  240
SDAESLWSYP
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1559360.0EF155936.1 Populus trichocarpa TINY-like protein (TINYL17) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011041634.11e-179PREDICTED: ethylene-responsive transcription factor ERF027-like
SwissprotQ9FJ903e-47ERF25_ARATH; Ethylene-responsive transcription factor ERF025
TrEMBLB9ID121e-149B9ID12_POPTR; Uncharacterized protein
STRINGPOPTR_0015s13840.11e-148(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56232144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52020.11e-35ERF family protein